TODO for QIIME 2
================

Plugins already accepted (added to the dependencies of qiime)
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 - q2cli
 - q2-cutadapt
 - q2-types


Plugins already in the NEW QUEUE
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 - q2templates
 - q2-metadata
 - q2-demux
 - q2-quality-filter
 - q2-feature-classifier
 - q2-feature-table
 - q2-taxa


The work already started
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 - q2-alignment:
    TODO: SINA (what the status?)

 - q2-emperor:
    TODO: EMPEROR

 - DADA2 (R package) - adopted by Steffen and put on salsa
    TODO: r-cran-rcppparallel (in new queue by Andreas as dep for r-cran-seurat)


The work NOT started yet
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 - q2-composition
 
 - q2-sample-classifier (deps: q2-feature-table)

 - q2-vsearch (deps: q2-feature-table)

 - q2-dada2:
    TODO: DADA2 (R package)

 - q2-deblur:
    TODO: Deblur

 - q2-diversity (deps: q2-feature-table, q2-emperor)
    TODO: unifrac

 - q2-gneiss:
    TODO: gneiss

 - q2-longitudinal (deps: q2-feature-table, q2-sample-classifier)

 - q2-phylogeny (deps: q2-alignment)

 - q2-quality-control (deps: q2-taxa)

 - q2-fragment-insertion (only the first release)
